Click here to close now.

Welcome!

Java Authors: Dan Ristic, Liz McMillan, Kevin Benedict, Elizabeth White, Pat Romanski

Blog Feed Post

Diving into H2O

by Joseph Rickert One of the remarkable features of the R language is its adaptability. Motivated by R’s popularity and helped by R’s expressive power and transparency developers working on other platforms display what looks like inexhaustible creativity in providing seamless interfaces to software that complements R’s strengths. The H2O R package that connects to 0xdata’s H2O software (Apache 2.0 License) is an example of this kind of creativity. According to the 0xdata website, H2O is “The Open Source In-Memory, Prediction Engine for Big Data Science”. Indeed, H2O offers an impressive array of machine learning algorithms. The H2O R package provides functions for building GLM, GBM, Kmeans, Naive Bayes, Principal Components Analysis, Principal Components Regression, Random Forests and Deep Learning (multi-layer neural net models). Examples with timing information of running all of these models on fairly large data sets are available on the 0xdata website. Execution speeds are very impressive. In this post, I thought I would start a little slower and look at H2O from an R point of View. H2O is a Java Virtual Machine that is optimized for doing “in memory” processing of distributed, parallel machine learning algorithms on clusters. A “cluster” is a software construct that can be can be fired up on your laptop, on a server, or across the multiple nodes of a cluster of real machines, including computers that form a Hadoop cluster. According to the documentation a cluster’s “memory capacity is the sum across all H2O nodes in the cluster”. So, as I understand it, if you were to build a 16 node cluster of machines each having 64GB of DRAM, and you installed H2O everything then you could run the H2O machine learning algorithms using a terabyte of memory. Underneath the covers, the H2O JVM sits on an in-memory, non-persistent key-value (KV) store that uses a distributed JAVA memory model. The KV store holds state information, all results and the big data itself. H2O keeps the data in a heap. When the heap gets full, i.e. when you are working with more data than physical DRAM, H20 swaps to disk. (See Cliff Click’s blog for the details.) The main point here is that the data is not in R. R only has a pointer to the data, an S4 object containing the IP address, port and key name for the data sitting in H2O. The R H2O package communicates with the H2O JVM over a REST API. R sends RCurl commands and H2O sends back JSON responses. Data ingestion, however, does not happen via the REST API. Rather, an R user calls a function that causes the data to be directly parsed into the H2O KV store. The H2O R package provides several functions for doing this Including: h20.importFile() which imports and parses files from a local directory, h20.importURL() which imports and pareses files from a website, and h2o.importHDFS() which imports and parses HDFS files sitting on a Hadoop cluster. So much for the background: let’s get started with H2O. The first thing you need to do is to get Java running on your machine. If you don’t already have Java the default download ought to be just fine. Then fetch and install the H2O R package. Note that the h2o.jar executable is currently shipped with the h2o R package. The following code from the 0xdata website ran just fine from RStudio on my PC: # The following two commands remove any previously installed H2O packages for R. if ("package:h2o" %in% search()) { detach("package:h2o", unload=TRUE) } if ("h2o" %in% rownames(installed.packages())) { remove.packages("h2o") }   # Next, we download, install and initialize the H2O package for R. install.packages("h2o", repos=(c("http://s3.amazonaws.com/h2o-release/h2o/rel-kahan/5/R", getOption("repos"))))   library(h2o) localH2O = h2o.init()   # Finally, let's run a demo to see H2O at work. demo(h2o.glm) Created by Pretty R at inside-R.org Note that the function h20.init() uses the defaults to start up R on your local machine. Users can also provide parameters to specify an IP address and port number in order to connect to a remote instance of H20 running on a cluster. h2o.init(Xmx="10g") will start up the H2O KV store with 10GB of RAM. demo(h2o,glm) runs the glm demo to let you know that everything is working just fine. I will save examining the model for another time. Instead let's look at some other H2O functionality. The first thing to get straight with H2O is to be clear about when you are working in R and when you are working in the H2O JVM. The H2O R package implements several R functions that are wrappers to H2O native functions. "H2O supports an R-like language" (See a note on R) but sometimes things behave differently than an R programmer might expect. For example, the R code: y <- apply(iris[,1:4],2,sum)y produces the following result: sepal.length sepal.width petal.length petal.width 876.5    458.6 563.7  179.9 now, let's see how things work in h2o, code loads h2o package, starts a local instance of uploads iris data set into from r package and produces very r-like summary. library(h2o) # load library localh2o =h2o.init() initial locl instance # upload file instance iris.hex >

Read the original blog entry...

More Stories By David Smith

David Smith is Vice President of Marketing and Community at Revolution Analytics. He has a long history with the R and statistics communities. After graduating with a degree in Statistics from the University of Adelaide, South Australia, he spent four years researching statistical methodology at Lancaster University in the United Kingdom, where he also developed a number of packages for the S-PLUS statistical modeling environment. He continued his association with S-PLUS at Insightful (now TIBCO Spotfire) overseeing the product management of S-PLUS and other statistical and data mining products.<

David smith is the co-author (with Bill Venables) of the popular tutorial manual, An Introduction to R, and one of the originating developers of the ESS: Emacs Speaks Statistics project. Today, he leads marketing for REvolution R, supports R communities worldwide, and is responsible for the Revolutions blog. Prior to joining Revolution Analytics, he served as vice president of product management at Zynchros, Inc. Follow him on twitter at @RevoDavid

@ThingsExpo Stories
VoxImplant has announced full WebRTC support in the newest versions of its Android SDK and iOS SDK. The updated SDKs, which enable audio and video calls on mobile devices, are now compatible with the WebRTC standard to allow any mobile app to communicate with WebRTC-enabled browsers, including Google Chrome, Mozilla Firefox, Opera, and, when available, Microsoft Spartan. The WebRTC-updated SDKs represent VoxImplant's continued leadership in simplifying the development of real-time communications (RTC) services for app developers. VoxImplant (built by Zingaya, the real-time communication servi...
The IoT Bootcamp is coming to Cloud Expo | @ThingsExpo on June 9-10 at the Javits Center in New York. Instructor. Registration is now available at http://iotbootcamp.sys-con.com/ Instructor Janakiram MSV previously taught the famously successful Multi-Cloud Bootcamp at Cloud Expo | @ThingsExpo in November in Santa Clara. Now he is expanding the focus to Janakiram is the founder and CTO of Get Cloud Ready Consulting, a niche Cloud Migration and Cloud Operations firm that recently got acquired by Aditi Technologies. He is a Microsoft Regional Director for Hyderabad, India, and one of the f...
SYS-CON Events announced today that BroadSoft, the leading global provider of Unified Communications and Collaboration (UCC) services to operators worldwide, has been named “Gold Sponsor” of SYS-CON's WebRTC Summit, which will take place on June 9-11, 2015, at the Javits Center in New York City, NY. BroadSoft is the leading provider of software and services that enable mobile, fixed-line and cable service providers to offer Unified Communications over their Internet Protocol networks. The Company’s core communications platform enables the delivery of a range of enterprise and consumer calling...
SYS-CON Events announced today that GENBAND, a leading developer of real time communications software solutions, has been named “Silver Sponsor” of SYS-CON's WebRTC Summit, which will take place on June 9-11, 2015, at the Javits Center in New York City, NY. The GENBAND team will be on hand to demonstrate their newest product, Kandy. Kandy is a communications Platform-as-a-Service (PaaS) that enables companies to seamlessly integrate more human communications into their Web and mobile applications - creating more engaging experiences for their customers and boosting collaboration and productiv...
SYS-CON Events announced today that Optimal Design, an Internet of Things solution provider, will exhibit at SYS-CON's Internet of @ThingsExpo, which will take place on June 9-11, 2015, at the Javits Center in New York City, NY. Optimal Design is an award winning product development firm offering industrial design and engineering services to the consumer, medical, and defense markets.
SYS-CON Events announced today that Vicom Computer Services, Inc., a provider of technology and service solutions, will exhibit at SYS-CON's 16th International Cloud Expo®, which will take place on June 9-11, 2015, at the Javits Center in New York City, NY. They are located at booth #427. Vicom Computer Services, Inc. is a progressive leader in the technology industry for over 30 years. Headquartered in the NY Metropolitan area. Vicom provides products and services based on today’s requirements around Unified Networks, Cloud Computing strategies, Virtualization around Software defined Data Ce...
SYS-CON Events announced today that Ciqada will exhibit at SYS-CON's @ThingsExpo, which will take place on June 9-11, 2015, at the Javits Center in New York City, NY. Ciqada™ makes it easy to connect your products to the Internet. By integrating key components - hardware, servers, dashboards, and mobile apps - into an easy-to-use, configurable system, your products can quickly and securely join the internet of things. With remote monitoring, control, and alert messaging capability, you will meet your customers' needs of tomorrow - today! Ciqada. Let your products take flight. For more inform...
What exactly is a cognitive application? In her session at 16th Cloud Expo, Ashley Hathaway, Product Manager at IBM Watson, will look at the services being offered by the IBM Watson Developer Cloud and what that means for developers and Big Data. She'll explore how IBM Watson and its partnerships will continue to grow and help define what it means to be a cognitive service, as well as take a look at the offerings on Bluemix. She will also check out how Watson and the Alchemy API team up to offer disruptive APIs to developers.
The 17th International Cloud Expo has announced that its Call for Papers is open. 17th International Cloud Expo, to be held November 3-5, 2015, at the Santa Clara Convention Center in Santa Clara, CA, brings together Cloud Computing, APM, APIs, Microservices, Security, Big Data, Internet of Things, DevOps and WebRTC to one location. With cloud computing driving a higher percentage of enterprise IT budgets every year, it becomes increasingly important to plant your flag in this fast-expanding business opportunity. Submit your speaking proposal today!
With IoT exploding, massive data will transform businesses with opportunities to monetize almost anything that can be measured. In this C-Level Roundtable Discussion at @ThingsExpo, Brendan O’Brien, Aria Systems Co-founder and Chief Evangelist, will lead an expert panel of consultants, thought leaders and practitioners who will look at these new monetization trends, discuss the implications, and detail lessons learned from their collective experience. Finally, the panel will point the way forward for enterprises who wish to leverage the resulting complex recurring revenue models, adding valu...
How is unified communications transforming the way businesses operate? In his session at WebRTC Summit, Arvind Rangarajan, Director of Product Marketing at BroadSoft, will discuss how to extend unified communications experience outside the enterprise through WebRTC. He will also review use cases across different industry verticals. Arvind Rangarajan is Director, Product Marketing at BroadSoft. He has over 19 years of experience in the telecommunications industry in various roles such as Software Development, Product Management and Product Marketing, applied across Wireless, Unified Communic...
Buzzword alert: Microservices and IoT at a DevOps conference? What could possibly go wrong? Join this panel of experts as they peel away the buzz and discuss the important architectural principles behind implementing IoT solutions for the enterprise. As remote IoT devices and sensors become increasingly intelligent, they become part of our distributed cloud environment, and we must architect and code accordingly. At the very least, you’ll have no problem filling in your buzzword bingo cards.
Internet of Things (IoT) will be a hybrid ecosystem of diverse devices and sensors collaborating with operational and enterprise systems to create the next big application. In their session at @ThingsExpo, Bramh Gupta, founder and CEO of robomq.io, and Fred Yatzeck, principal architect leading product development at robomq.io, will discuss how choosing the right middleware and integration strategy from the get-go will enable IoT solution developers to adapt and grow with the industry, while at the same time reduce Time to Market (TTM) by using plug and play capabilities offered by a robust I...
@ThingsExpo has been named the Top 5 Most Influential Internet of Things Brand by Onalytica in the ‘The Internet of Things Landscape 2015: Top 100 Individuals and Brands.' Onalytica analyzed Twitter conversations around the #IoT debate to uncover the most influential brands and individuals driving the conversation. Onalytica captured data from 56,224 users. The PageRank based methodology they use to extract influencers on a particular topic (tweets mentioning #InternetofThings or #IoT in this case) takes into account the number and quality of contextual references that a user receives.
SYS-CON Events announced today that Dyn, the worldwide leader in Internet Performance, will exhibit at SYS-CON's 16th International Cloud Expo®, which will take place on June 9-11, 2015, at the Javits Center in New York City, NY. Dyn is a cloud-based Internet Performance company. Dyn helps companies monitor, control, and optimize online infrastructure for an exceptional end-user experience. Through a world-class network and unrivaled, objective intelligence into Internet conditions, Dyn ensures traffic gets delivered faster, safer, and more reliably than ever.
IoT is still a vague buzzword for many people. In his session at @ThingsExpo, Mike Kavis, Vice President & Principal Cloud Architect at Cloud Technology Partners, discussed the business value of IoT that goes far beyond the general public's perception that IoT is all about wearables and home consumer services. He also discussed how IoT is perceived by investors and how venture capitalist access this space. Other topics discussed were barriers to success, what is new, what is old, and what the future may hold. Mike Kavis is Vice President & Principal Cloud Architect at Cloud Technology Pa...
The only place to be June 9-11 is Cloud Expo & @ThingsExpo 2015 East at the Javits Center in New York City. Join us there as delegates from all over the world come to listen to and engage with speakers & sponsors from the leading Cloud Computing, IoT & Big Data companies. Cloud Expo & @ThingsExpo are the leading events covering the booming market of Cloud Computing, IoT & Big Data for the enterprise. Speakers from all over the world will be hand-picked for their ability to explore the economic strategies that utility/cloud computing provides. Whether public, private, or in a hybrid form, clo...
The WebRTC Summit 2015 New York, to be held June 9-11, 2015, at the Javits Center in New York, NY, announces that its Call for Papers is open. Topics include all aspects of improving IT delivery by eliminating waste through automated business models leveraging cloud technologies. WebRTC Summit is co-located with 16th International Cloud Expo, @ThingsExpo, Big Data Expo, and DevOps Summit.
As Marc Andreessen says software is eating the world. Everything is rapidly moving toward being software-defined – from our phones and cars through our washing machines to the datacenter. However, there are larger challenges when implementing software defined on a larger scale - when building software defined infrastructure. In his session at 16th Cloud Expo, Boyan Ivanov, CEO of StorPool, will provide some practical insights on what, how and why when implementing "software-defined" in the datacenter.
While not quite mainstream yet, WebRTC is starting to gain ground with Carriers, Enterprises and Independent Software Vendors (ISV’s) alike. WebRTC makes it easy for developers to add audio and video communications into their applications by using Web browsers as their platform. But like any market, every customer engagement has unique requirements, as well as constraints. And of course, one size does not fit all. In her session at WebRTC Summit, Dr. Natasha Tamaskar, Vice President, Head of Cloud and Mobile Strategy at GENBAND, will explore what is needed to take a real time communications ...