Welcome!

Java IoT Authors: Zakia Bouachraoui, Liz McMillan, Elizabeth White, Pat Romanski, Yeshim Deniz

News Feed Item

Malaysia Genome Institute Advances Bioinformatics Research Using SGI Technology

SGI Altix, Altix XE Cluster and SGI InfiniteStorage Combination Delivers Cohesive NAS/SAN Workflow Environment for All Stages of

SUNNYVALE, Calif. and LORNE, Australia, Feb. 20 /PRNewswire-FirstCall/ -- 29th Annual Lorne Genome Conference -- To create an optimal workflow that encompasses the diverse computing requirements of bioinformatics research, the Malaysia Genomics Institute (MGI) selected SGI to design a unique SGI hybrid computing solution. Because bioinformatics research uses a variety of software at various stages in the workflow, the combined use of shared-memory systems and clusters can provide an optimal environment for the efficient use of each application. MGI looked to SGI to design a seamless, cohesive workflow for the entire process that would integrate into the existing infrastructure. SGI delivered a hybrid computing solution that consists of the new SGI BioCluster as well as an SGI(R) Altix(R) shared memory server and an SGI(R) InfiniteStorage CXFS(TM) SAN shared file system, which makes the entire workflow transparent to the user regardless of software employed or stage of the process at which scientists are performing.

"Bioinformatics brings together an avalanche of systematic biological data with the analytic theory and practical tools of mathematics and computer science," said Mohd Noor Mat Isa, Laboratory Manager, Malaysia Genome Institute. "SGI delivered flexible computing with a hybrid architecture that integrates high-throughput, high-performance and FPGA-based solutions for all of our bioinformatics applications -- a solution that seamlessly runs applications in the environment best suited for optimal performance."

Genomic sequencing operations utilize applications such as PHRAP, Staden Package, JAZZ , Consed, and BLAST each with specific compute requirements necessitating multiple systems. The SGI BioCluster solution includes a software layer providing transparent workload scheduling through which users can submit jobs without hardware concerns. The SGI solution's administrative software intelligently cues submissions to run on the appropriate platform, providing best-in-class performance and optimal load balancing. Integrated cluster management tools and dynamic software controls can change the total system from a single meta-cluster to semi-autonomous sub-clusters as needs dictate. For unexpected time-critical computing challenges, the SGI hybrid solution enables administrators to bring all available resources to bear on a single job.

MGI, also known as GENOMalaysia, is a network-based organization carrying out discovery research on tropical bioresources through projects in genome sequencing, comparative and functional genomics, and structural biology. Several major research projects are currently underway at MGI. For example, the Microbial Genomics Research for Gene and Natural Product Discovery project is focusing on two model organisms, Burkholderia pseudomallei, a locally important soil pathogen and Eimeria tenella, a local avian protozoan. The project will harness the SGI solution to dissect the organisms' genomes to gain new insights on virulence, antibiotic resistance, host specificity and infectivity.

The Institute also collaborates with other research facilities and universities throughout the world, including the Antarctica Research Group at the University of Tasmania, Wellcome Trust Sanger Institute, University of Sheffield, UK and Stanford University.

SGI worked with channel partner Quantum Beez Sdn Bhd (formerly known as Open Source Systems) to design and develop the SGI hybrid solution for MGI.

"Malaysia Genome Institute needed a single, integrated computing platform that leverages the best of two distinct computing environments: a larger shared memory system for high performance computing, and a cluster-based system for high throughput computing, both supported by an SGI InfiniteStorage CXFS SAN shared file system that provides uncompromised data sharing, improved workflow, and reduced costs for these data intensive environments," said Deepak Thakkar, higher education and research segment manager, SGI. "SGI produced one powerful solution with two architectures and a high-speed SAN infrastructure for direct access to all data. This hybrid solution delivers optimum return on investment for heterogeneous or multi-vendor based workflows."

SGI -- Innovation for Results(TM)

SGI is a leader in high-performance computing. SGI delivers a complete range of high-performance server, visualization and storage solutions along with industry-leading professional services and support that enable its customers to overcome the challenges of complex data-intensive workflows and accelerate breakthrough discoveries, innovation and information transformation. SGI helps customers solve significant challenges whether it's enhancing the quality of life through drug research, designing and manufacturing safer and more efficient cars and airplanes, studying global climate change, providing technologies for homeland security and defense, or helping enterprises manage large data. With offices worldwide, the company is headquartered in Sunnyvale, Calif., and can be found on the Web at sgi.com.

(C) 2007 SGI. All rights reserved. SGI, Altix, the SGI cube and the SGI logo are registered trademarks, and CXFS is a trademark of SGI in the United States and/or other countries worldwide. All other trademarks mentioned herein are the property of their respective owners.

This news release contains forward-looking statements regarding SGI technologies and third-party technologies that are subject to risks and uncertainties. These risks and uncertainties could cause actual results to differ materially from those described in such statements. The reader is cautioned not to rely unduly on these forward-looking statements, which are not a guarantee of future or current performance. Such risks and uncertainties include long-term program commitments, the performance of third parties, the sustained performance of current and future products, financing risks, the ability to integrate and support a complex technology solution involving multiple providers and users, and other risks detailed from time to time in the company's most recent SEC reports, including its reports on Form 10-K and Form 10-Q.

MEDIA CONTACT Marla Robinson [email protected] 256.773.2371 SGI PR HOTLINE 650.933.7777 SGI PR FACSIMILE 650.933.0714

SGI

CONTACT: Marla Robinson of SGI, +1-256-773-2371, [email protected]

Web site: http://www.sgi.com/

More Stories By PR Newswire

Copyright © 2007 PR Newswire. All rights reserved. Republication or redistribution of PRNewswire content is expressly prohibited without the prior written consent of PRNewswire. PRNewswire shall not be liable for any errors or delays in the content, or for any actions taken in reliance thereon.

IoT & Smart Cities Stories
DXWorldEXPO LLC announced today that Telecom Reseller has been named "Media Sponsor" of CloudEXPO | DXWorldEXPO 2018 New York, which will take place on November 11-13, 2018 in New York City, NY. Telecom Reseller reports on Unified Communications, UCaaS, BPaaS for enterprise and SMBs. They report extensively on both customer premises based solutions such as IP-PBX as well as cloud based and hosted platforms.
In his keynote at 19th Cloud Expo, Sheng Liang, co-founder and CEO of Rancher Labs, discussed the technological advances and new business opportunities created by the rapid adoption of containers. With the success of Amazon Web Services (AWS) and various open source technologies used to build private clouds, cloud computing has become an essential component of IT strategy. However, users continue to face challenges in implementing clouds, as older technologies evolve and newer ones like Docker c...
The best way to leverage your Cloud Expo presence as a sponsor and exhibitor is to plan your news announcements around our events. The press covering Cloud Expo and @ThingsExpo will have access to these releases and will amplify your news announcements. More than two dozen Cloud companies either set deals at our shows or have announced their mergers and acquisitions at Cloud Expo. Product announcements during our show provide your company with the most reach through our targeted audiences.
To Really Work for Enterprises, MultiCloud Adoption Requires Far Better and Inclusive Cloud Monitoring and Cost Management … But How? Overwhelmingly, even as enterprises have adopted cloud computing and are expanding to multi-cloud computing, IT leaders remain concerned about how to monitor, manage and control costs across hybrid and multi-cloud deployments. It’s clear that traditional IT monitoring and management approaches, designed after all for on-premises data centers, are falling short in ...
The deluge of IoT sensor data collected from connected devices and the powerful AI required to make that data actionable are giving rise to a hybrid ecosystem in which cloud, on-prem and edge processes become interweaved. Attendees will learn how emerging composable infrastructure solutions deliver the adaptive architecture needed to manage this new data reality. Machine learning algorithms can better anticipate data storms and automate resources to support surges, including fully scalable GPU-c...
A valuable conference experience generates new contacts, sales leads, potential strategic partners and potential investors; helps gather competitive intelligence and even provides inspiration for new products and services. Conference Guru works with conference organizers to pass great deals to great conferences, helping you discover new conferences and increase your return on investment.
Poor data quality and analytics drive down business value. In fact, Gartner estimated that the average financial impact of poor data quality on organizations is $9.7 million per year. But bad data is much more than a cost center. By eroding trust in information, analytics and the business decisions based on these, it is a serious impediment to digital transformation.
SYS-CON Events announced today that Silicon India has been named “Media Sponsor” of SYS-CON's 21st International Cloud Expo, which will take place on Oct 31 – Nov 2, 2017, at the Santa Clara Convention Center in Santa Clara, CA. Published in Silicon Valley, Silicon India magazine is the premiere platform for CIOs to discuss their innovative enterprise solutions and allows IT vendors to learn about new solutions that can help grow their business.
We are seeing a major migration of enterprises applications to the cloud. As cloud and business use of real time applications accelerate, legacy networks are no longer able to architecturally support cloud adoption and deliver the performance and security required by highly distributed enterprises. These outdated solutions have become more costly and complicated to implement, install, manage, and maintain.SD-WAN offers unlimited capabilities for accessing the benefits of the cloud and Internet. ...
Founded in 2000, Chetu Inc. is a global provider of customized software development solutions and IT staff augmentation services for software technology providers. By providing clients with unparalleled niche technology expertise and industry experience, Chetu has become the premiere long-term, back-end software development partner for start-ups, SMBs, and Fortune 500 companies. Chetu is headquartered in Plantation, Florida, with thirteen offices throughout the U.S. and abroad.